Tellurium kinetic experiments

When to use

Use this skill for deterministic reaction-network trajectories and independent parameter conditions from a local model. The helper performs SBML consistency checks, CVODE integration and an actual COMBINE archive replay. It exports each condition's exact SBML and the SED-ML experiment rather than handing off an unrecorded notebook state.

Runtime

uv venv --python 3.11 kinetic-env
uv pip install --python kinetic-env/bin/python tellurium==2.2.13.1 libroadrunner==2.10.0 \
  antimony==3.2.0 python-libsbml==5.21.2 python-libsedml==2.0.34 python-libcombine==0.2.20