The Agent Skills Directory

[SAFE]: The skill relies on legitimate, well-known bioinformatics packages including gseapy and gprofiler-official for all analytical tasks.
[SAFE]: Network communication is restricted to authoritative scientific repositories and APIs such as Enrichr, MSigDB, and g:Profiler, which is standard for biological data analysis.
[SAFE]: The Python script scripts/run_enrichment.py performs safe data handling, involving input parsing of CSV/TXT files and writing results to user-defined directories without using dangerous execution primitives like eval() or os.system().
[SAFE]: The skill includes comprehensive documentation on biological interpretation and reproducibility, adhering to scientific best practices.

pathway-enrichment