pyopenms
Pass
Audited by Gen Agent Trust Hub on Nov 8, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSINDIRECT_PROMPT_INJECTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The script
scripts/accurate_mass_search.pyreferences and provides instructions for downloading metabolite mapping files from the official OpenMS GitHub repository (OpenMS/OpenMS). These are trusted resources required for the metabolite annotation functionality. - [INDIRECT_PROMPT_INJECTION]: The skill is designed to ingest and process external bioinformatics data files, including mass spectrometry formats (mzML, mzXML), protein sequences (FASTA), and identification results (idXML). These ingestion points represent an attack surface for indirect prompt injection if the files contain malicious instructions, though this is a standard risk for data processing tools and is mitigated by the specialized nature of the parsers used.
Audit Metadata