The Agent Skills Directory

[SAFE]: The skill provides a comprehensive integration with the DNAnexus cloud platform for genomics. It relies on official tools including the dxpy Python SDK and the dx-toolkit CLI, which are standard in the bioinformatics industry.
[EXTERNAL_DOWNLOADS]: The skill guides the user to install the dxpy package from official package registries. This is a legitimate dependency required for interaction with the DNAnexus API.
[COMMAND_EXECUTION]: Documentation within the skill includes examples of using Python's subprocess module to wrap common bioinformatics command-line utilities (like samtools or bwa). This is the intended functional purpose of the skill, enabling the creation of analysis wrappers for cloud execution.
[INDIRECT_PROMPT_INJECTION]: The skill defines patterns for ingesting metadata and data object details from the DNAnexus platform. While this represents a surface for indirect instructions, the data processed is highly structured genomics metadata (filenames, job states, record properties), posing minimal risk of prompt injection when handled through the provided SDK patterns.

dnanexus-integration