pyopenms
Warn
Audited by Snyk on Aug 17, 2026
Risk Level: MEDIUM
Full Analysis
MEDIUM W011: Third-party content exposure detected (indirect prompt injection risk).
- Third-party content exposure detected (medium risk: 0.30). In
scripts/accurate_mass_search.py, the required runtime workflow loads attacker-provided--inputfeatureXML/consensusXML intopyopenms(FeatureXMLFile().load/ConsensusXMLFile().load) and then later re-reads/writes text-derived rows from the generated mzTab, meaning outsider-authored free text embedded in XML/mzTab fields can reach the LLM pipeline at runtime.
Issues (1)
W011
MEDIUMThird-party content exposure detected (indirect prompt injection risk).
Audit Metadata