The Agent Skills Directory

[COMMAND_EXECUTION]: The skill provides access to samtools and bcftools command-line utilities through the pysam Python wrapper. These functions allow the agent to execute external binaries for genomic data operations such as sorting, indexing, and variant viewing, which is the primary intended purpose of the library.
[SAFE]: The skill follows standard Python package management practices by installing pysam via uv. The provided examples and reference documentation align with legitimate genomic research workflows. No patterns of data exfiltration, obfuscation, or unauthorized persistence were identified during the analysis.

pysam