The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill retrieves protein glycosylation data and configuration from established academic research services, including GlyConnect (expasy.org), GlyTouCan (glytoucan.org), and the Technical University of Denmark (dtu.dk). These are well-known scientific resources and their use is consistent with the skill's stated purpose.
[COMMAND_EXECUTION]: The skill provides instructions for installing and running the glycoshield bioinformatics package via the command line to perform glycan shielding analysis on molecular dynamics trajectories. This is a legitimate tool for the described glycoengineering tasks.
[INDIRECT_PROMPT_INJECTION]:
Ingestion points: The skill processes protein sequences and external API responses from GlyConnect and GlyTouCan within SKILL.md and references/glycan_databases.md.
Boundary markers: No specific delimiters or instructions are provided to separate external sequence or API data from the agent's core instructions.
Capability inventory: The skill utilizes network requests via the requests library and local command-line tools such as glycoshield.
Sanitization: No explicit validation or sanitization is performed on the data retrieved from external biological databases.

glycoengineering