pysam
Pass
Audited by Gen Agent Trust Hub on Mar 31, 2026
Risk Level: SAFECOMMAND_EXECUTIONEXTERNAL_DOWNLOADS
Full Analysis
- [SAFE]: No security issues detected. The skill provides legitimate instructions for genomic data analysis using the established 'pysam' library, following industry-standard practices for bioinformatics.
- [COMMAND_EXECUTION]: The skill documents the use of 'pysam.samtools' and 'pysam.bcftools' modules. These are standard Python wrappers for specialized bioinformatics command-line tools used for file manipulation tasks like sorting and indexing, and do not pose a security risk in this context.
- [EXTERNAL_DOWNLOADS]: The installation instructions recommend 'uv pip install pysam' to install a widely-used, reputable library from the Python Package Index. No remote script execution or downloads from untrusted sources were identified.
Audit Metadata