The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill recommends installing the reactome2py package from PyPI, which is the official Python client for the Reactome database.
[DATA_EXFILTRATION]: The skill transmits user-provided biological identifiers and expression data to https://reactome.org for processing and analysis. This is the core intended functionality of the skill and targets a well-known scientific service.
[COMMAND_EXECUTION]: Includes a helper script scripts/reactome_query.py that facilitates API interactions. It reads user-provided text files and writes analysis results to local JSON files.
[PROMPT_INJECTION]: The skill processes data from the Reactome API and local files, which constitutes an indirect prompt injection surface. Given the curated nature of the database, the risk is minimal.
Ingestion points: Pathway data from reactome.org API; gene lists from local files (e.g., genes.txt).
Boundary markers: Not explicitly defined in the provided examples.
Capability inventory: Network access (requests), file read/write, and CLI execution via scripts/reactome_query.py.
Sanitization: Standard JSON parsing is used for API responses.

reactome-database