deep-research

Warn

Audited by Runlayer on Feb 27, 2026

Risk Level: MEDIUM
Scan Summary
Max Score
88%
Files
11
Flagged
4
Chunks
13
Flagged Files (4)
deep-research/scripts/paper_db.pyMEDIUM
88.5%

Malicious tool definition detected

Description: records = load_jsonl(args.input) records.append(record) records = deduplicate(records) save_jsonl(records, args.input) print(f"Added record, DB now has {len(records)} papers", file=sys.stderr) elif args.command == "filter": filter_db(args.input, args.output, min_score=args.min_score, max_papers=args.max_papers, require_keywords=args.keywords) elif args.command == "stats": stats = compute_stats(args.input) print(json.dumps(stats, indent=2)) elif args.command == "export": if args.form

deep-research/scripts/search_semantic_scholar.pyLOW
69.2%

Tool passed security scan

deep-research/scripts/search_arxiv.pyLOW
66.9%

Tool passed security scan

deep-research/scripts/download_papers.pyLOW
51.8%

Tool passed security scan

Passed Files (7)Click to expand
deep-research/references/workflow-phases.mdOK
34.9%

Tool passed security scan

deep-research/references/api-reference.mdOK
26.4%

Tool passed security scan

deep-research/scripts/bibtex_manager.pyOK
16.6%

Tool passed security scan

deep-research/scripts/compile_report.pyOK
16.5%

Tool passed security scan

deep-research/SKILL.mdOK
11.6%

Tool passed security scan

deep-research/scripts/extract_pdf.pyOK
11.1%

Tool passed security scan

deep-research/references/note-format.mdOK
2.4%

Tool passed security scan

Audit Metadata
Max File Score
88%
Classification
KNOWN_SERVER_ALL_UNKNOWN
Files Scanned
11
Files Flagged
4
Chunks Analyzed
13
Analyzed
Feb 27, 2026, 04:11 AM
Security Audit — runlayer — deep-research