scikit-bio
Pass
Audited by Gen Agent Trust Hub on Jun 20, 2026
Risk Level: SAFE
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill provides instructions to install the
scikit-biopackage usinguv pip. This is a well-known, reputable open-source library in the bioinformatics ecosystem. - [PROMPT_INJECTION]: The skill's primary functionality involves processing external biological data files (FASTA, FASTQ, BIOM, etc.), which constitutes an indirect prompt injection surface.
- Ingestion points: Biological data is ingested via
skbio.DNA.read,skbio.io.read,TreeNode.read, andTable.readas documented inSKILL.mdandreferences/api_reference.md. - Boundary markers: The provided code examples do not explicitly include delimiters or warnings to ignore embedded instructions within the biological data.
- Capability inventory: The skill includes file system write operations (
seq.write,table.write) and complex statistical modeling; no patterns of arbitrary command execution or unauthorized network access were found. - Sanitization: The scikit-bio library uses format-specific parsers that validate the biological alphabet (e.g., DNA, RNA, Protein) and table schemas, ensuring the data conforms to expected structural standards.
Audit Metadata