Simulate SimBiology Models

Run simulations of SimBiology models: deterministic ODE, stochastic SSA, scenario exploration, and sensitivity analysis.

When to Use

• "simulate", "run", "predict" model behavior
• "what if" / "what happens if" (implies simulation or scenarios)
• Time-course results from a model
• Dose-response studies, parameter sweeps, factorial designs
• Stochastic, SSA, Gillespie, noise, gene expression variability
• "which parameters matter most", sensitivity, Sobol, Morris
• Keywords: "simulate", "run", "predict", "what-if", "stochastic", "sensitivity"

When NOT to Use