Microbiome Research
Microbiome Research with ToolUniverse
Comprehensive microbiome analysis using MGnify (EBI metagenomics), GTDB (genome taxonomy), ENA (sequencing data), OLS (ontology lookup for ENVO biomes), and EuropePMC (literature).
Core Tools
| Tool | Purpose | Auth |
|---|---|---|
| MGnify_search_studies | Find metagenomics studies by biome/keyword | None |
| MGnify_search_studies_detail | Study metadata, abstract, sample counts | None |
| MGnify_list_analyses | List taxonomic/functional analysis outputs for a study | None |
| MGnify_get_taxonomy | Taxonomic composition from an analysis | None |
| MGnify_get_go_terms | GO functional annotations from an analysis | None |
| MGnify_get_interpro | InterPro protein domain annotations | None |
| MGnify_list_biomes | Browse MGnify biome hierarchy | None |
| MGnify_search_genomes | Search metagenome-assembled genomes (MAGs) | None |
| MGnify_get_genome | Genome quality metrics (completeness, contamination) | None |
| GTDB_search_genomes | Search bacterial/archaeal genomes by taxonomy | None |
| GTDB_get_species | Species cluster details from GTDB | None |
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