Set up Monocle 3 as a remote tool

Validation status (2026-08-16): R 4.4.3/Monocle3 1.4.27, loopback discovery, and two deterministic 240-cell calls passed with finite pseudotime for all cells; both disclosed the acyclic fallback after the upstream loop-closing bug. Public publication, cross-user isolation, representative biology, broad concurrency, and recovery remain incomplete. Authenticated private Platform import and owner testing passed on 2026-08-16; public publication and independent-caller authorization/isolation remain untested.

Prerequisites

• Run from the ToolUniverse repository root on Linux with Python 3.12.3.
• CPU only; R spatial dependencies can require substantial RAM.
• Keep provider data, weights, caches, and credentials outside Git.
• Bind to loopback. A non-loopback bind requires TOOLUNIVERSE_API_TOKEN; never put it in arguments or results.

Run the standard-library contract check before downloading large dependencies:

python scripts/remote_validation/setup_skill_preflight.py --implementation monocle3