setup-squidpy-remote-tool

Installation
SKILL.md

Set up Squidpy as a remote tool

Validation status (2026-08-16): Squidpy dependencies, loopback discovery, and a bounded 72-spot neighborhood-enrichment call passed with a finite 3 x 3 z-score matrix. Public publication, cross-user isolation, representative spatial biology, broad concurrency, and recovery remain incomplete. Authenticated private Platform import and owner testing passed on 2026-08-16; public publication and independent-caller authorization/isolation remain untested.

Prerequisites

  • Run from the ToolUniverse repository root on Linux with Python 3.12.3.
  • CPU only here; neighborhood enrichment forces one job.
  • Keep provider data, weights, caches, and credentials outside Git.
  • Bind to loopback. A non-loopback bind requires TOOLUNIVERSE_API_TOKEN; never put it in arguments or results.

Run the standard-library contract check before downloading large dependencies:

python scripts/remote_validation/setup_skill_preflight.py --implementation squidpy
Installs
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GitHub Stars
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First Seen
Aug 24, 2026
setup-squidpy-remote-tool — mims-harvard/tooluniverse