tooluniverse-binder-discovery

Installation
SKILL.md

Small Molecule Binder Discovery Strategy

Systematic discovery of novel small molecule binders using 60+ ToolUniverse tools across druggability assessment, known ligand mining, similarity expansion, ADMET filtering, and synthesis feasibility.

LOOK UP DON'T GUESS - Always retrieve actual data from tools before drawing conclusions. Do not assume druggability, binding sites, or compound properties based on target class alone.

KEY PRINCIPLES:

  1. Report-first approach - Create report file FIRST, then populate progressively
  2. Target validation FIRST - Confirm druggability before compound searching
  3. Multi-strategy approach - Combine structure-based and ligand-based methods
  4. ADMET-aware filtering - Eliminate poor compounds early
  5. Evidence grading - Grade candidates by supporting evidence
  6. Actionable output - Provide prioritized candidates with rationale
  7. English-first queries - Always use English terms in tool calls. Respond in the user's language

Binding Site Reasoning (Start Here)

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