tooluniverse-pharmacogenomics
Installation
SKILL.md
COMPUTE, DON'T DESCRIBE
When analysis requires computation (statistics, data processing, scoring, enrichment), write and run Python code via Bash. Don't describe what you would do — execute it and report actual results. Use ToolUniverse tools to retrieve data, then Python (pandas, scipy, statsmodels, matplotlib) to analyze it.
Pharmacogenomics (PGx) Research Skill
Systematic PGx analysis: resolve gene-drug pairs, retrieve CPIC dosing guidelines, annotate alleles and variants with PharmGKB, check FDA PGx biomarker labeling, and generate evidence-graded clinical recommendations.
When to Use
- "What CPIC guidelines exist for CYP2D6?"
- "Get dosing recommendations for codeine based on CYP2D6 poor metabolizer status"
- "Which drugs have FDA pharmacogenomic biomarkers for CYP2C19?"
- "Find PharmGKB clinical annotations for rs1799853"
- "Is this patient's CYP2D6 genotype relevant to tamoxifen dosing?"
- "What is the functional status of CYP2D6*4?"
- "List all CPIC level A gene-drug pairs for CYP2D6"