tooluniverse-pharmacogenomics

Installation
SKILL.md

COMPUTE, DON'T DESCRIBE

When analysis requires computation (statistics, data processing, scoring, enrichment), write and run Python code via Bash. Don't describe what you would do — execute it and report actual results. Use ToolUniverse tools to retrieve data, then Python (pandas, scipy, statsmodels, matplotlib) to analyze it.

Pharmacogenomics (PGx) Research Skill

Systematic PGx analysis: resolve gene-drug pairs, retrieve CPIC dosing guidelines, annotate alleles and variants with PharmGKB, check FDA PGx biomarker labeling, and generate evidence-graded clinical recommendations.

When to Use

  • "What CPIC guidelines exist for CYP2D6?"
  • "Get dosing recommendations for codeine based on CYP2D6 poor metabolizer status"
  • "Which drugs have FDA pharmacogenomic biomarkers for CYP2C19?"
  • "Find PharmGKB clinical annotations for rs1799853"
  • "Is this patient's CYP2D6 genotype relevant to tamoxifen dosing?"
  • "What is the functional status of CYP2D6*4?"
  • "List all CPIC level A gene-drug pairs for CYP2D6"

Workflow Overview

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Mar 25, 2026