tooluniverse-population-genetics-1000genomes
COMPUTE, DON'T DESCRIBE
When analysis requires computation (statistics, data processing, scoring, enrichment), write and run Python code via Bash. Don't describe what you would do — execute it and report actual results. Use ToolUniverse tools to retrieve data, then Python (pandas, scipy, statsmodels, matplotlib) to analyze it.
Population Genetics with 1000 Genomes (IGSR)
Use IGSR tools to search 1000 Genomes populations and samples, explore data collections, and combine with GWAS tools for population-stratified analysis.
When to Use
- "List all African (AFR) populations in the 1000 Genomes Project"
- "Find samples from the YRI (Yoruba) population"
- "What 1000 Genomes data collections are available?"
- "Which GWAS SNPs for type 2 diabetes have population-specific effects?"
- "Find all SNPs mapped to TCF7L2 in GWAS studies"
NOT for (use other skills instead)
- Allele frequencies from gnomAD -> Use
tooluniverse-population-genetics
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