The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: The skill references the cellxgene-census Python package as a required dependency for accessing genomic census data from the Chan Zuckerberg Initiative. This is a standard and well-known library in the bioinformatics community.
[INDIRECT_PROMPT_INJECTION]: The skill incorporates tools designed to fetch and process data from external scientific sources, creating a potential surface for indirect prompt injection if those sources were to contain malicious instructions.
Ingestion points: External data is ingested via tools such as PubMed_search_articles, GEO_search_rnaseq_datasets, hca_search_projects, and CELLxGENE_get_expression_data in the SKILL.md file.
Boundary markers: The instructions do not define specific delimiters or warnings to the agent to ignore potentially embedded instructions within the fetched scientific data.
Capability inventory: The skill is limited to data retrieval and analysis tools; it lacks dangerous capabilities such as arbitrary file system writes, shell command execution, or uncontrolled network exfiltration.
Sanitization: There are no explicit instructions for sanitizing or filtering the content retrieved from scientific databases before it is processed by the agent.

tooluniverse-stem-cell-organoid