The Agent Skills Directory

[COMMAND_EXECUTION]: The skill instructs the agent to run git init, git add, and git commit to manage the project's version history. These are standard operations for research and development workflows.
[INDIRECT_PROMPT_INJECTION]: The skill ingests user-provided inputs such as project titles, research questions, and target journals to populate metadata files like project.yaml and README.md. This represents a standard input-to-file-write surface common in scaffolding tools.
Ingestion points: User input for project metadata and directory mapping in SKILL.md (Step 1 and Step 1b).
Boundary markers: None explicitly defined for the interpolation of user strings into YAML/Markdown templates.
Capability inventory: The skill possesses file system write access for directory and file creation, as well as shell command execution for Git operations.
Sanitization: No explicit sanitization or escaping logic is described for handling special characters in user-provided metadata strings.

project-scaffold