MSA-Search NIM

Generate protein MSAs with GPU-accelerated MMSeqs2. Use this SKILL.md for first-pass hosted/local usage; load supplemental files only when needed:

• references/api.md: exact endpoints, schemas, Docker flags, response fields.
• references/science.md: MSA purpose, pairing/templates, limits, handoffs.
• references/parameters.md: database, pairing, depth, and template tuning.
• references/validation.md: alignment, template, and artifact checks.
• references/examples.md: compact hosted/local request patterns.

Choose Mode And Endpoint

Ask only when context is unclear:

Hosted NVIDIA API or local Docker NIM?