kermt-embed

Extract per-molecule embeddings from any encoder-bearing KERMT checkpoint. The skill is the workflow orchestrator: validate ckpt, validate CSV, clean SMILES, launch the runner blocking, return the per-readout .npy files.

Skill and runtime paths

Set SKILL_DIR to the absolute path of this installed skill directory. Export KERMT_REPO as the absolute path to the KERMT checkout used for model execution. The bundled container helper mounts that checkout at /workspace and this skill at /skill (read-only). Commands inside the container use /skill/scripts/; defaults are bundled in config/. See Released models for checkpoint bundle requirements.

Downloads and local outputs