Auto Ontology setup

Purpose

Bring up the current Auto Ontology implementation, troubleshoot it, or connect an agent to an instance that is already running. Do not invent a second installer: the official installation is the Helm chart in repository-root DEPLOYMENT.md; Docker Compose runs the same stack on one machine. dev_tools/setup_env.sh is a developer tool, not an installer. Typed setup, connection, ingestion, compilation, and readiness artifacts are in runtime-contract.yaml.