BioContext Knowledge Queries

Use this skill when the user wants to look up gene/protein annotations, query pathway databases, find cell type markers, search biomedical literature, or explore drug-disease associations. BioContext provides programmatic access to 49 biomedical databases through a unified Python API.

This is a knowledge integration layer — use it to annotate analysis results (e.g., annotate DEG lists with protein function, find pathways for gene clusters, validate marker genes against PanglaoDB).

Available Functions by Category

Protein & Genomics