skills/omicverse/omicverse-skills/bulk-rna-seq-differential-expression-with-omicverse/Gen Agent Trust Hub
bulk-rna-seq-differential-expression-with-omicverse
Pass
Audited by Gen Agent Trust Hub on Jul 22, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTIONPROMPT_INJECTION
Full Analysis
- [EXTERNAL_DOWNLOADS]: The skill instructs the agent to download gene mapping assets and pathway databases using
ov.utils.download_geneid_annotation_pair()andov.utils.download_pathway_database(). These downloads are standard biological reference data retrieved through theomicverselibrary's official utility functions. - [COMMAND_EXECUTION]: The skill involves processing local data files and performing statistical computations using the
omicverseandpandaslibraries. These operations are intended for the primary purpose of RNA-seq data analysis. - [PROMPT_INJECTION]: The skill ingests data from a user-supplied file (
counts.txt), which represents an indirect prompt injection surface. - Ingestion points: Local gene-level count matrix loaded via
ov.pd.read_csvin bothSKILL.mdandreference.md. - Boundary markers: No explicit prompt boundary markers or "ignore instructions" warnings are present during the data loading phase.
- Capability inventory: The workflow includes file reading, statistical analysis, plotting, and remote data retrieval using library-specific utilities.
- Sanitization: The skill implements basic defensive validation using Python assertions to ensure that treatment and control groups exist in the data and do not overlap.
Audit Metadata