omicverse-microbiome-phylogeny
Pass
Audited by Gen Agent Trust Hub on Aug 6, 2026
Risk Level: SAFE
Full Analysis
- [SAFE]: The skill follows standard bioinformatics practices for phylogenetic tree construction and analysis. It utilizes specialized external binaries (MAFFT and FastTree) for its core functionality, which is a legitimate and expected behavior for this use case.
- [COMMAND_EXECUTION]: The skill utilizes ov.alignment.build_phylogeny to execute external bioinformatics binaries, specifically mafft and FastTree, via the system shell. This is the intended primary purpose of the skill.
- [EXTERNAL_DOWNLOADS]: The skill depends on external software and libraries, including mafft, FastTree, and the unifrac Python package, which are recommended to be installed through standard package managers like Bioconda and PyPI.
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