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skills/omicverse/omicverse-skills/omicverse-single-cell-kb-alignment/Gen Agent Trust Hub

omicverse-single-cell-kb-alignment

Pass

Audited by Gen Agent Trust Hub on Jul 22, 2026

Risk Level: SAFECOMMAND_EXECUTION
Full Analysis
  • [COMMAND_EXECUTION]: The skill's primary functionality involves wrapping the omicverse Python library, which invokes the external kb (kallisto|bustools) binary via shell commands to perform genomic sequence alignment.
  • [INDIRECT_PROMPT_INJECTION]: The skill is designed to ingest and process biological data files such as FASTQ, FASTA, and GTF.
  • Ingestion points: User-specified paths for genomic data (e.g., fastq_paths, fasta_paths, gtf_paths) in the ov.alignment.single.ref and ov.alignment.single.count functions.
  • Boundary markers: Not explicitly defined in the prompt instructions.
  • Capability inventory: Execution of the kb command-line tool with user-provided file arguments.
  • Sanitization: The skill relies on the underlying omicverse library and the kb tool for input validation and file handling.
  • [EXTERNAL_DOWNLOADS]: The documentation in references/source-notebook-map.md mentions external data acquisition (e.g., via wget) but specifically notes these steps are excluded from the skill's execution boundary.
Audit Metadata
Risk Level
SAFE
Analyzed
Jul 22, 2026, 05:42 PM
Security Audit — agent-trust-hub — omicverse-single-cell-kb-alignment