The Agent Skills Directory

[COMMAND_EXECUTION]: The skill utilizes the omicverse library to wrap the kb (kallisto|bustools) command-line tool, executing shell commands to perform genomic sequence alignment and quantification as intended. The instructions focus on tool configuration rather than arbitrary shell access.\n- [EXTERNAL_DOWNLOADS]: The functionality requires the external kb-python package or a standalone kb binary to be installed on the system to function correctly.\n- [DYNAMIC_EXECUTION]: A test script in assets/acceptance.json dynamically creates a mock kb executable within a temporary directory to validate the skill's logic. This behavior is confined to the validation suite.\n- [SAFE]: The skill operates within the expected boundaries for bioinformatics data processing, and no evidence of malicious obfuscation, data exfiltration, or unauthorized persistence mechanisms was found.

omicverse-single-cell-kb-alignment