omicverse-single-cell-lda-topic-clustering
Pass
Audited by Gen Agent Trust Hub on Jul 22, 2026
Risk Level: SAFEEXTERNAL_DOWNLOADSCOMMAND_EXECUTION
Full Analysis
- [SAFE]: The skill provides instructions for performing LDA topic clustering on single-cell data using the
omicverselibrary. All operations described, including model fitting and label prediction, are standard practices in bioinformatics. - [EXTERNAL_DOWNLOADS]: The skill utilizes the
omicverseandmiralibraries as its primary computational backends. These are established open-source tools within the genomics research community. - [COMMAND_EXECUTION]: The skill includes a validation script (
scripts/lda_smoke.py) used during acceptance testing to verify the availability of required functions. This script generates synthetic data and performs basic checks locally. - [DATA_EXFILTRATION]: The skill includes an
ondisk=Trueoption that writes temporary training and test datasets to the local filesystem. This is a documented behavior for handling large datasets and does not involve network exfiltration.
Audit Metadata