The Agent Skills Directory

[SAFE]: The skill provides documentation and Python code snippets for spatial transcriptomics workflows using the omicverse library. All operations involve standard bioinformatics data processing such as reading local spatial data files (e.g., Visium, Xenium, Stereo-seq), performing statistical analysis, and saving results locally.
[EXTERNAL_DOWNLOADS]: The skill mentions dependencies on well-known scientific computing and bioinformatics libraries such as scanpy, anndata, squidpy, cellpose, and pytorch-lightning. It also notes that gseapy may require network access to download gene sets, which is a standard and documented feature of that library for enrichment analysis.
[DATA_EXFILTRATION]: No evidence of data exfiltration was found. File operations are restricted to reading input data and writing analysis results or cache files to local directories specified by the user.
[COMMAND_EXECUTION]: The skill does not contain any arbitrary shell command execution or suspicious subprocess calls. Command-line interactions are limited to standard library usage within a Python environment.
[PROMPT_INJECTION]: The instructions focus entirely on guiding the agent through complex technical workflows. There are no attempts to bypass safety filters or override system instructions.

spatial-transcriptomics-tutorials-with-omicverse