STRING Protein Interaction Analysis with OmicVerse

Overview

Use this skill when the user has a gene list and wants to explore protein-protein interactions via the STRING database. The workflow covers species selection, STRING API queries, network construction, and styled visualization through ov.bulk.pyPPI.

Instructions

1. Set up libraries

import omicverse as ov
ov.style()  # or ov.plot_set()

2. Collect and validate gene inputs

gene_list = ['FAA4', 'POX1', 'FAT1', 'FAS2', 'FAS1', 'FAA1', 'OLE1', 'YJU3', 'TGL3', 'INA1', 'TGL5']