bindingdb-skill
Installation
SKILL.md
Operating rules
- Use
scripts/rest_request.pyfor all BindingDB API calls. - Use
base_url=https://bindingdb.org. - Add
response=application/jsoninparamswhen you want structured output; some empty-result cases may still return an empty body. - For broad lookup endpoints, start around
max_items=10; similarity-style queries are better with5-10. - Re-run requests in long conversations instead of relying on older tool output.
- Treat displayed
...in tool previews as UI truncation, not literal request content.
Execution behavior
- Return concise markdown summaries from the script JSON by default.
- Prefer these paths:
rest/getLigandsByPDBs,rest/getLigandsByUniprots,rest/getLigandsBySmiles, andrest/getTargetsByCompound. - If the user needs the full payload, set
save_raw=trueand report the saved file path instead of pasting large response bodies into chat.