gnomad-graphql-skill

Operating rules

• Use scripts/gnomad_graphql.py for all gnomAD GraphQL work.
• For nested GraphQL results, start with max_items=3 to 5.
• Keep selection sets narrow and page or filter at the query level instead of asking for broad dumps.
• Use query_path for long GraphQL documents instead of pasting large inline queries.
• Re-run requests in long conversations instead of relying on earlier tool output.
• Treat displayed ... in tool previews as UI truncation, not part of the real query.

Execution behavior

• Return concise markdown summaries from the script JSON by default.
• Return raw JSON only if the user explicitly asks for machine-readable output.
• Prefer targeted queries for variant frequency, gene constraint, or transcript consequence context.
• If the user needs the full payload, set save_raw=true and report the saved file path.

Input

• Read one JSON object from stdin.
• Required field: query or query_path
• Optional fields: variables, max_items, max_depth, timeout_sec, save_raw, raw_output_path
• Common gnomAD patterns: