ngs-bulk-rnaseq-differential-expression
Pass
Audited by Gen Agent Trust Hub on Aug 15, 2026
Risk Level: SAFECOMMAND_EXECUTION
Full Analysis
- Command Execution: The skill is designed to execute local Python scripts (
run_bulk_rnaseq_de.pyandngs_preflight.py) to process RNA-seq data. It also includes functionality to launch a Marimo review app on the local host. These operations are core to the skill's data analysis pipeline but involve interacting with the underlying system shell. - Data Ingestion and Processing: The skill processes external data inputs such as count matrices and sample metadata. While this is necessary for biological analysis, it represents a potential surface for indirect prompt injection if the ingested data contains unexpected or malformed content. The skill lacks explicit sanitization or boundary marker instructions in the provided documentation, though standard analysis libraries typically handle these data formats.
- Local Service Hosting: The automated launch of a localhost Marimo server provides a web-based interface for reviewing results. Users should be aware that this starts a local network service, which is a common pattern for interactive data science tools.
Audit Metadata