ngs-bulk-rnaseq
Pass
Audited by Gen Agent Trust Hub on Aug 15, 2026
Risk Level: SAFECOMMAND_EXECUTIONREMOTE_CODE_EXECUTION
Full Analysis
- Command Execution: The skill generates and runs shell commands for bioinformatics processing, specifically using local Python scripts and Nextflow. This is a standard pattern for NGS (Next-Generation Sequencing) analysis automation.\n- Remote Pipeline Execution: It utilizes the Nextflow manager to run the
nf-core/rnaseqpipeline. While this involves downloading and executing code from an external repository, nf-core is a well-known and trusted community source for scientific workflows.\n- External Data Processing: The skill's logic depends on ingesting user-provided sample sheets and metadata files. This introduces an input surface where external data is used to define command parameters, making sanitization of these inputs an important consideration for the underlying implementation.
Audit Metadata