Commit, PR, and Merge

Stage changes, verify quality gates, commit with a descriptive message, create a PR, and merge to main.

Steps

Step 0: Quality Gate (Pre-Commit)

Run before branching. For every changed .qmd, .tex, or .R file that has quality rubrics, run:

python3 scripts/quality_score.py <changed-file-paths>

• If any file scores below 80, halt and report the findings. The user must either fix the issues or explicitly override with phrases like "commit anyway" or "skip quality gate".
• If all files score 80+, continue.

Spawn the verifier agent (via Task with subagent_type=verifier) to run compilation/render checks on the changed files. Report pass/fail before committing.