Natural Language SQL Query for CDM Database

Query the KBase CDM DuckDB database using natural language questions. This skill translates your questions to SQL and executes them against the database.

When to Use This Skill

Use this skill when:

• User asks to query the CDM database with natural language
• User wants to explore data without writing SQL
• User asks questions like "How many samples are there?" or "Show me reads with high counts"
• User wants to invoke /nl-sql-query command

Prerequisites

Before using this skill:

1. CDM Database: Must exist at cdm_store.db (or specify custom path)
2. API Key: ANTHROPIC_API_KEY environment variable must be set
3. Load Data: Run just load-cdm-store-bricks-64gb if database doesn't exist