alphafold-database
Pass
Audited by Gen Agent Trust Hub on Jun 27, 2026
Risk Level: SAFECOMMAND_EXECUTIONEXTERNAL_DOWNLOADS
Full Analysis
- [COMMAND_EXECUTION]: The skill uses
subprocess.run(shell=True)to executegsutilcommands for downloading proteome datasets from Google Cloud Storage. While functional for bulk data access, the use of shell execution with string interpolation is a common pattern for interacting with cloud CLI tools in scientific workflows. - [EXTERNAL_DOWNLOADS]: The skill retrieves protein structure predictions and metadata from authoritative scientific domains, specifically
alphafold.ebi.ac.uk,www.uniprot.org, andwww.ebi.ac.uk. These are well-known services maintained by EMBL-EBI and the UniProt consortium. - [EXTERNAL_DOWNLOADS]: The skill suggests the installation of standard Python packages from official registries, including
biopython,requests,numpy,matplotlib,pandas,scipy,google-cloud-bigquery, andgsutilto support data retrieval and structural analysis.
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