The Agent Skills Directory

[EXTERNAL_DOWNLOADS]: Fetches genomic data, clinical variant reports, and configuration files from official National Center for Biotechnology Information (NCBI) endpoints, including ncbi.nlm.nih.gov and eutils.ncbi.nlm.nih.gov. These operations are consistent with established bioinformatics workflows.
[REMOTE_CODE_EXECUTION]: Provides instructions to install the entrezdirect utility suite by piping a setup script from the NCBI FTP server (ftp.ncbi.nlm.nih.gov) directly to the shell. This is a standard and trusted distribution method for official NIH genomic software.
[COMMAND_EXECUTION]: Demonstrates the use of local command-line utilities such as bcftools, awk, curl, and wget to automate scientific data retrieval and variant call set processing.
[DATA_EXFILTRATION]: Correctly guides users on the implementation of API keys and administrative contact information (email) for NCBI's E-utilities services. The skill does not contain hardcoded credentials or evidence of unauthorized data transmission.
[PROMPT_INJECTION]: The skill was analyzed for behavioral override patterns and deceptive instructions. No malicious patterns were identified. Regarding indirect injection surfaces:
Ingestion points: Genomic data (XML, VCF, and tab-delimited files) from ftp.ncbi.nlm.nih.gov and JSON responses from eutils.ncbi.nlm.nih.gov.
Boundary markers: No specific delimiters or warnings for embedded instructions are present in the code examples.
Capability inventory: curl, wget, bcftools (shell), and Python-based data processing.
Sanitization: Code snippets demonstrate standard parsing logic without explicit content sanitization.
Note: Given the authoritative nature of the government source, the risk associated with this ingestion surface is considered safe.

clinvar-database