pathml
Pass
Audited by Gen Agent Trust Hub on Jun 27, 2026
Risk Level: SAFE
Full Analysis
- [COMMAND_EXECUTION]: The skill documentation includes examples for installing the pathml package and its dependencies using uv pip. It also provides a template for generating and submitting SLURM batch jobs (sbatch) for processing large slide datasets on high-performance computing clusters.- [EXTERNAL_DOWNLOADS]: The instructions guide the user to download the PathML library from PyPI and reference public histology datasets such as PanNuke and TCGA. These are established resources in the scientific community.- [REMOTE_CODE_EXECUTION]: The skill documents the use of SegmentMIFRemote, which facilitates remote cell segmentation by sending image data to the DeepCell API (deepcell.org). This is an expected functionality for users without local GPU resources and is hosted by a recognized academic institution.
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