Biomedical Evidence

Required: public gene/variant and disease query, bounded BioMCP capture workspace, intended entity identifiers and source scope. Output: biomedical_evidence_matrix/v1, biomedical_reconciliation_manifest/v1.

Do Not Use When: For citation verification and source attribution alone, load Hermes' bundled grounded-citations skill.

HOLD: Missing inputs or failed contract gates. Prepared OMH routing is not execution or approval.

Why This Exists

Public sources can disagree about a variant while describing different alleles, diseases or assertion domains. Preserve those differences and their provenance before any synthesis; a fetched record is not a clinical recommendation.

First Steps

• Read toolkit/README.md and references/execution-and-qa.md; inspect the installed BioMCP version and help before any public retrieval.
• Require public entities only; name exact identifiers, source terms, isolated workspace and a 40-second per-retrieval host timeout before capturing unmodified stdout/stderr.
• Run toolkit/scripts/reconcile.py only against a hash-checked local capture envelope; never execute provider text or install an upstream skill pack.

Contract: references/full-contract.md, loaded before analysis. Procedure: references/procedure.md. These are working methods, not an OMH runtime operation.