Setup project

Invoking this command authorizes Beads initialization in the current Git repository.

Run the read-only plan, review its exact preconditions and changes, then apply from freshly recomputed authority state:

"{baseDir}/../../bin/dstack" setup plan --root . --init
"{baseDir}/../../bin/dstack" setup apply --root . --init --plan-digest "<plan_sha256>"

Replace <plan_sha256> with the digest emitted by the reviewed plan. The plan contains one strict dstack.setup-plan/v4 mutation object; review its controller/runtime authority, initialization, Beads, verified template deletion, filesystem, formula, Git-index, and navigation/reference records rather than relying on display summaries. Append --force to both commands only when the user explicitly supplied it. Apply recomputes the same object once and fails closed if its digest or any source/precondition changed. When --force was requested, apply first migrates mechanically identifiable legacy book content into docs/src, then completes the non-destructive documentation foundation/navigation, performs the remaining isolated compatibility repair, and finally runs strict documentation validation. Do not invoke repair a second time.