Personal Genomics

Runs the local personal-genomics toolkit over one or more raw DNA files and reports the findings. All analysis is offline; genetic data never leaves the machine.

First: track the workflow

Create a task for each step below, then work them to completion. The run is multi-step and the reporting step (surfacing findings safely) is the one most often skipped once the analysis file is written.

Locate the toolkit

The scripts and their virtualenv live at ~/git/personal-genomics (a .venv/ with pandas/numpy/scipy/reportlab). Use that venv's Python: ~/git/personal-genomics/.venv/bin/python.

If the repo or venv is missing, set it up before analysing:

cd ~/git/personal-genomics && python3 -m venv .venv && .venv/bin/pip install -r requirements.txt

If the toolkit lives elsewhere, ask the user for the path rather than guessing.