Version Compatibility

Reference examples tested with: DESeq2 1.42+

Before using code patterns, verify installed versions match. If versions differ:

• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Data Harmonization for Multi-Omics

"Prepare my multi-omics data for integration" → Normalize, batch-correct, align features, and handle missing values across RNA-seq, proteomics, methylation, and other data types before joint analysis.

• R: MultiAssayExperiment for unified multi-omics containers

MultiAssayExperiment Structure

library(MultiAssayExperiment)