bio-multi-omics-mixomics-analysis
Installation
SKILL.md
Version Compatibility
Reference examples tested with: mixOmics 6.26+
Before using code patterns, verify installed versions match. If versions differ:
- R:
packageVersion("<pkg>")then?function_nameto verify parameters
If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.
mixOmics Multi-Omics Analysis
"Integrate my multi-omics data with supervised analysis" → Identify cross-omics feature signatures that discriminate between groups using sparse PLS and multi-block discriminant analysis.
- R:
mixOmics::block.splsda()(DIABLO),mixOmics::spls()for pairwise integration
Setup and Data Preparation
Goal: Load and align omics matrices with matching sample labels and phenotype information.