Bio-Ontology Mapper

When to Use

• Use this skill when the task is to Map unstructured biomedical text to standardized ontologies (SNOMED CT.
• Use this skill for evidence insight tasks that require explicit assumptions, bounded scope, and a reproducible output format.
• Use this skill when you need a documented fallback path for missing inputs, execution errors, or partial evidence.

Key Features

• Scope-focused workflow aligned to: Map unstructured biomedical text to standardized ontologies (SNOMED CT.
• Packaged executable path(s): scripts/main.py.
• Reference material available in references/ for task-specific guidance.
• Structured execution path designed to keep outputs consistent and reviewable.

Dependencies

• Python: 3.10+. Repository baseline for current packaged skills.
• dataclasses: unspecified. Declared in requirements.txt.
• difflib: unspecified. Declared in requirements.txt.