🦖 PharmGx Reporter

Generate a pharmacogenomic report from consumer genetic data (23andMe, AncestryDNA).

What it does

1. Parses raw genetic data files (auto-detects 23andMe or AncestryDNA format)
2. Extracts 31 pharmacogenomic SNPs across 12 genes
3. Calls star alleles and determines metabolizer phenotypes
4. Looks up CPIC drug recommendations for 51 medications
5. Generates a markdown report with gene profiles, drug tables, and alerts

Genes covered

CYP2C19, CYP2D6, CYP2C9, VKORC1, SLCO1B1, DPYD, TPMT, UGT1A1, CYP3A5, CYP2B6, NUDT15, CYP1A2

Drug classes

Antiplatelet, opioids, statins, anticoagulants, PPIs, antidepressants (TCAs, SSRIs, SNRIs), antipsychotics, NSAIDs, oncology, immunosuppressants, antivirals