Version Compatibility

Reference examples tested with: DESeq2 1.42+, edgeR 4.0+, ggplot2 3.5+, matplotlib 3.8+, numpy 1.26+, scanpy 1.10+, scikit-learn 1.4+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures
• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

Specialized Omics Plots

"Create omics-specific plots" → Generate MA plots, PCA biplots, sample correlation heatmaps, and other domain-specific visualizations for genomics data.

• Python: scanpy.pl.pca(), matplotlib custom plots
• R: DESeq2::plotMA(), PCAtools::biplot()

Scope