Version Compatibility

Reference examples tested with: DESeq2 1.42+, edgeR 4.0+, limma 3.58+, scanpy 1.10+

Before using code patterns, verify installed versions match. If versions differ:

• R: packageVersion('<pkg>') then ?function_name to verify parameters

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

edgeR Basics

Differential expression analysis using edgeR's quasi-likelihood framework for RNA-seq count data.

Required Libraries