Version Compatibility

Reference examples tested with: MACS3 3.0+

Before using code patterns, verify installed versions match. If versions differ:

• R: packageVersion('<pkg>') then ?function_name to verify parameters
• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

m6A Peak Calling

"Call m6A peaks from my MeRIP-seq data" → Identify m6A-modified RNA regions by comparing immunoprecipitated (IP) and input samples using statistical enrichment testing.

• R: exomePeak2::exomePeak2() for GC-bias aware peak calling
• CLI: macs3 callpeak as an alternative broad peak caller

exomePeak2 (Recommended)