Version Compatibility

Reference examples tested with: minimap2 2.26+, pandas 2.2+

Before using code patterns, verify installed versions match. If versions differ:

• Python: pip show <package> then help(module.function) to check signatures
• CLI: <tool> --version then <tool> --help to confirm flags

If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying.

m6Anet Analysis

"Detect m6A from my Nanopore direct RNA data" → Identify m6A modifications directly from Oxford Nanopore signal-level data without immunoprecipitation using a neural network classifier.

• CLI: m6anet dataprep → m6anet inference on Nanopolish eventalign output

Documentation: https://m6anet.readthedocs.io/

Data Preparation